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If you have ever worked with websites, web servers, cPanel, WHM and Exchange, you will know that there is never a situation that is ever the same. With default configurations for installations, changing settings and automatic updates, it’s easy for systems to sometimes get tangled in a few knots. Thankfully, there are tools available to debug things to identify specifically what is going on, below is a process which will hopefully save you hours of time investigating issues like this to quickly identify what is happening when your emails are going astray.


Sending & Receiving Emails

Ok, so if we look at the underlying technologies about sending & receiving emails first, this helps to understand where to first look for problems when they do occur. Let’s break this down into the two main categories of IMAP and Exchange as they both behave significantly differently. For Exchange, whether you are running a private Exchange server or whether you are on the Microsoft Hosted Exchange platform, this doesn’t make a huge deal of difference, so this information is going to be generic to the two with the understanding that there are always the odd discrepancies depending on configurations etc.

I’m going to assume that you have already set your MX Records correctly at the DNS. Make sure you have an SPF Record / TXT record with SPF details in if you are sending from IMAP or you will get blacklisted by Microsoft Exchange and will need to un-blacklist yourself.


Microsoft Exchange – Sending & Receiving Emails

Whenever you send emails from from Microsoft Exchange, these emails are automatically handled by Exchange itself. Meaning that Microsoft Exchange respects the rules of the internet in relation to the DNS MX Records. So when you send emails to, Microsoft Exchange looks up the MX records for and simply sends the message on its merry way to be picked up by the mail exchanger. Simple.

Whenever you receive emails into, likewise, Microsoft simply looks within the Exchange settings for the domain and decides which account this belongs in, if this is an invalid account or if this needs to be forwarded on to a distribution group or similar. Fairly straight forward.

Overall, Microsoft Exchange does just work and rarely is the problem at Microsoft’s end.


IMAP, cPanel, WHM and Web Servers – Sending & Receiving Emails

In comparison to Microsoft Exchange above which is essentially a single piece of software, sending and receiving emails with IMAP is a whole different ball game. It is one of the reasons why we always recommend companies use Microsoft Exchange, not only because it is a much more powerful system, but because it also costs you more for us to support you with IMAP related issues as they take 10x longer to get to the bottom of. Just use Exchange where possible.

Never the less, many businesses use a mixture of technologies for a variety of reasons, so it’s important to be able to understand how things fit together and most importantly how things can be quickly debugged and tweaked. So let’s look at how these different technologies fit together.

WHM is an administrator piece of software for managing web servers, much like an administrator account on your personal computer which allows you to install software, configure settings, create additional users etc. The difference being is that it allows you ultimate control of functionality through an easy to use interface and most importantly debugging tools for email delivery from and to your web server.

cPanel is designed for individual users and accounts. It is the equivalent of having an administrator account on your home computer (i.e. WHM) and then an account each for Mum, Dad, Son, Daughter (i.e. cPanel accounts). It is designed to allow each user / account to manage their own items on the web server in a safe and secure way without being able to interfere with other people’s data.

IMAP is a technology which transcends both WHM, cPanel and often desktop applications which makes things a little more complex when debugging issues. Domains are assigned to individual cPanel accounts, such as and And individual emails for are configured within the individual cPanel accounts, even though the IMAP technology means that it is the actual server sending and receiving emails and deciding how to deal with email routing.

Websites also send emails from scripts and code which has been developed which introduces another layer of complexity as from an underlying technology point of view, the settings which are configured mean that emails from websites may or may not be delivered, even if they appear to be sent when you send a message on the contact form on the website for example. Always test your contact forms on a regular basis.

Whenever you receive email to your IMAP email address for, ‘the internet’ routes this email from the sender, via the DNS MX record settings, to your web server where your emails live. The software running on your web server then ultimately decides which account this should end up in. Receiving emails is generally ok as long as the accounts are set up.

Whenever you send email from your IMAP email address for, this is when things get a little different. This is because there are many technologies interacting together, particularly when you are using a desktop email application to send emails or even a website to send emails. There are other things to consider particularly when web servers, websites and email applications may have been configured a specific way which may in fact mean that emails are actually sent through SMTP opposed to IMAP.


Debugging Email Deliverability Problems

Ok, so now we’ve had a look at the many moving parts behind the scenes when it comes to emails, let’s look at how you go about debugging email deliverability problems and where to start. I’m going to stick with IMAP here as Exchange is an enormous topic on its own and takes quite a bit of learning. Once Exchange is configured, it just works. Get in touch if you are having issues related to Microsoft Exchange configuration and I’m sure we can help walk you through what needs to be done.


DNS Configuration

This has been mentioned before, but it’s worth reiterating. Make sure your DNS is configured correctly and is pointing to the right place it should be. This relates specifically to your MX records, and TXT, A, SPF, or SRV records which may need to be created depending on your email technology in the background. Speak with your web hosting company for the actual settings here.


Review What is Actually Happening

Next, review what is actually happening to try and determine where the problem may lie. Review;

  • Can you send emails via webmail?
  • Can you receive emails via webmail?
  • Can you send emails via your desktop application?
  • Can you receive emails via your desktop application?
  • Is your website sending emails?
  • Are you receiving emails sent by your website?
  • Can you send emails to specific domains?
  • Can you receive emails from specific domains?
  • Can you send emails to specific domains when sending from another specific domain?
  • Can you receive emails to a specific domain when sending from another specific domain?
  • Can you successfully authenticate with the server when trying to send and receive emails?
  • Have you correctly configured your email settings and port settings?
  • Have you waited 24 hours for DNS propagation if you have just changed your DNS settings?
  • Are there any service interruptions with your web server?

The more you can narrow down exactly what is happening here, the greater the clues are to what is actually going on. Yes, your emails don’t work, but why, what is the specific issue we are facing. Ultimately, when emails are sent, they should be received at their intended destination. When things don’t quite go to plan here, it means that something in the process is doing something different which is generally down to some settings somewhere which need to be tweaked.


Tracking Received Email Deliverability

Receiving emails into IMAP is much easier to debug than sending emails, so it’s always best to start here. If your DNS records are set correctly, then you should be receiving emails by default. As long as you have an email account set up within cPanel, your emails should be arriving successfully. Always check your junk folders and make sure that you web server isn’t automatically junking / deleting emails that it believes are junk. I have seen this happen in the past with over active junk email settings. Likewise, keep an eye out for any email forwarders that may have been set up and are taking priority when the email arrives and sending it off somewhere else before it lands in your inbox.

Generally speaking though, if you aren’t receiving emails it is due to your DNS records being incorrect or the email address you are sending to blocking emails from your server as they look like spam. Make sure you are sending these test emails from an email account that you know already works. It helps to have a few email accounts such as Hotmail / Outlook / Gmail etc. so that you can test this from various sources. If you aren’t receiving emails from your other email accounts that you know are working correctly, then re-check your DNS settings.


Tracking Sent Email Deliverability

Now onto tracking your sent email deliverability issues. This depends on where you are sending emails from in the first place. If you are sending emails from your website and they aren’t being received, this again can be for many reasons. It could be related to how your web server is configured for when it is sending emails to, it could be trying to deliver your emails locally to an email account hosted on the web server and in which case if you are running your emails remotely through Microsoft Exchange, then you may need to update these settings. It could also be the way in which you are sending emails as many web hosting companies actively turn off specific functionality on web servers which allow code to send emails as a security measure. Speak with your web hosting company about this, it is the only way to know for sure.

If you are having issues sending emails via webmail or via a desktop application, first try to verify that this isn’t an issue which relates to your desktop application communicating with your webserver. Try and aim for a single point of failure to test if this point is failing or not and work your way through each one by one, I’m talking about testing specifically, you should never have a single point of failure for anything in business – if you do this is a whole other discussion to be had. Assuming you have tested this, next step is to look within WHM to see where your emails are actually going when they are being sent from one of the accounts on IMAP. There is debugging tool within WHM under Email > Mail Delivery Reports which allows you to see the email you just sent, where did it end up. Often this relates to an issue with local / remote / automatic mail delivery. Check what is happening here, if the recipient isn’t who you intended, then you need to configure your settings within cPanel accordingly so that cPanel isn’t overriding any settings when it shouldn’t be doing.


Outliers and Things to Remember

The above is a rough guide and doesn’t cover everything you could ever check for. For example, one project we recently worked on had a unique issue which doesn’t crop up very often whereby sent emails were getting lost in the ether due to configuration settings within cPanel which means that only a tiny amount of emails were getting lost, everything else was absolutely fine. The situation was that within cPanel, multiple domains were configured including and One website was running Microsoft Exchange, the other IMAP. Exchange was working perfect. IMAP was working perfect….almost. The issue cropped up when on IMAP wanted to send emails to on Exchange. Because both domains were configured under the same cPanel account, MX Entry settings within cPanel meant that emails sent from on IMAP were attempted to being delivered locally due the domain having an automatic configuration in place which decided where emails should be delivered. Changing this to a Remote location resolved this issue, meaning that cPanel no longer overwrote the default behaviour of the DNS and things continued to function normally.

There are always things to bear in mind and check.



When using older technology such as IMAP instead of the far superior Microsoft Exchange, debugging email deliverability issues can be tough if you don’t know your way around your web server, the software that is running and particularly on cheap web hosting packages where you may not even have access to many of the tools outlined above. It is so important to make sure you have good web hosting in place for your business to allow you to debug problems like this quickly and continue working away. The last thing you want is weeks of delays trying to get to the bottom of these types of issues as you could be missing vital orders and customer queries.

Should you need any support managing your email technologies, get in touch and we can happily support you in this area. The reality is that all web servers are configured differently, have many technologies running and various settings based on your individual requirements. Cheaper web hosting is more of a challenge to debug as you simply often don’t have access to the tools you need and can only deal with the issues by speaking with the web hosting company yourself or letting someone like ourselves do this on your behalf so they don’t try and bamboozle you with technical jargon with the aim of fobbing you off. It’s always good to work with companies who understand these technologies inside and out. Get in touch for more information.

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Michael Cropper

Founder & Managing Director at Contrado Digital Ltd
Michael has been running Contrado Digital for over 10 years and has over 15 years experience working across the full range of disciplines including IT, Tech, Software Development, Digital Marketing, Analytics, SaaS, Startups, Organisational and Systems Thinking, DevOps, Project Management, Multi-Cloud, Digital and Technology Innovation and always with a business and commercial focus. He has a wealth of experience working with national and multi-national brands in a wide range of industries, across a wide range of specialisms, helping them achieve awesome results. Digital transformation, performance and collaboration are at the heart of everything Michael does.